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  "Title": "Draw Gene Arrow Maps in 'ggplot2'",
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  "Description": "A 'ggplot2' extension for drawing gene arrow maps.",
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  "URL": "https://wilkox.org/gggenes/",
  "BugReports": "https://github.com/wilkox/gggenes/issues/",
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    "message": "refactor(grid): standardise unit conversions on NPC coordinates\n\nReplace \"native\" with \"npc\" in all grid unit conversions within\ncompose_grob() and update corresponding documentation. This ensures\nconsistent coordinate handling across all coordinate systems.\n\nCloses #94\n\nCo-Authored-By: Claude <noreply@anthropic.com>\n",
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    "ggplot2"
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
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      "date": "2017-08-24"
    },
    {
      "version": "0.3.0",
      "date": "2018-05-26"
    },
    {
      "version": "0.3.1",
      "date": "2018-06-16"
    },
    {
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      "date": "2018-11-07"
    },
    {
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      "date": "2019-06-24"
    },
    {
      "version": "0.4.1",
      "date": "2020-12-10"
    },
    {
      "version": "0.5.0",
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    },
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    "geom_feature_label",
    "geom_gene_arrow",
    "geom_gene_label",
    "geom_subgene_arrow",
    "geom_subgene_label",
    "geom_terminator",
    "geom_terminator_label",
    "make_alignment_dummies",
    "theme_genes",
    "theme_genes_flipped"
  ],
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      "class": [
        "data.frame"
      ],
      "fields": [
        "molecule",
        "start",
        "end",
        "gene"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    },
    {
      "name": "example_features",
      "title": "A set of example genetic features.",
      "object": "example_features",
      "class": [
        "data.frame"
      ],
      "fields": [
        "molecule",
        "name",
        "type",
        "position",
        "forward"
      ],
      "rows": 23,
      "table": true,
      "tojson": true
    },
    {
      "name": "example_features_polar",
      "title": "A set of example genetic features.",
      "object": "example_features_polar",
      "class": [
        "data.frame"
      ],
      "fields": [
        "molecule",
        "name",
        "type",
        "position",
        "forward"
      ],
      "rows": 6,
      "table": true,
      "tojson": true
    },
    {
      "name": "example_genes",
      "title": "A set of example genes.",
      "object": "example_genes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "molecule",
        "gene",
        "start",
        "end",
        "strand",
        "orientation"
      ],
      "rows": 72,
      "table": true,
      "tojson": true
    },
    {
      "name": "example_genes_polar",
      "title": "A set of example genes.",
      "object": "example_genes_polar",
      "class": [
        "data.frame"
      ],
      "fields": [
        "molecule",
        "gene",
        "start",
        "end",
        "strand",
        "orientation"
      ],
      "rows": 18,
      "table": true,
      "tojson": true
    },
    {
      "name": "example_subgenes",
      "title": "A set of example genes.",
      "object": "example_subgenes",
      "class": [
        "data.frame"
      ],
      "fields": [
        "molecule",
        "gene",
        "start",
        "end",
        "strand",
        "subgene",
        "from",
        "to",
        "orientation"
      ],
      "rows": 143,
      "table": true,
      "tojson": true
    },
    {
      "name": "example_subgenes_polar",
      "title": "A set of example genes.",
      "object": "example_subgenes_polar",
      "class": [
        "data.frame"
      ],
      "fields": [
        "molecule",
        "gene",
        "start",
        "end",
        "strand",
        "subgene",
        "from",
        "to",
        "orientation"
      ],
      "rows": 40,
      "table": true,
      "tojson": true
    },
    {
      "name": "example_terminators",
      "title": "A set of example terminators.",
      "object": "example_terminators",
      "class": [
        "data.frame"
      ],
      "fields": [
        "molecule",
        "name",
        "position"
      ],
      "rows": 2,
      "table": true,
      "tojson": true
    },
    {
      "name": "example_terminators_polar",
      "title": "A set of example terminators.",
      "object": "example_terminators_polar",
      "class": [
        "data.frame"
      ],
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        "molecule",
        "name",
        "position"
      ],
      "rows": 2,
      "table": true,
      "tojson": true
    }
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    {
      "page": "example_dummies",
      "title": "A set of example dummy alignment genes.",
      "topics": [
        "example_dummies"
      ]
    },
    {
      "page": "example_features",
      "title": "A set of example genetic features.",
      "topics": [
        "example_features",
        "example_features_polar"
      ]
    },
    {
      "page": "example_genes",
      "title": "A set of example genes.",
      "topics": [
        "example_genes",
        "example_genes_polar",
        "example_subgenes",
        "example_subgenes_polar"
      ]
    },
    {
      "page": "example_terminators",
      "title": "A set of example terminators.",
      "topics": [
        "example_terminators",
        "example_terminators_polar"
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    },
    {
      "page": "geom_feature",
      "title": "A 'ggplot2' geom to draw point genetic features",
      "topics": [
        "geom_feature"
      ]
    },
    {
      "page": "geom_feature_label",
      "title": "A 'ggplot2' geom to add text labels to point genetic features",
      "topics": [
        "geom_feature_label"
      ]
    },
    {
      "page": "geom_gene_arrow",
      "title": "A 'ggplot2' geom to draw genes as arrows",
      "topics": [
        "geom_gene_arrow"
      ]
    },
    {
      "page": "geom_gene_label",
      "title": "A 'ggplot2' geom to add text labels to gene arrows",
      "topics": [
        "geom_gene_label"
      ]
    },
    {
      "page": "geom_subgene_arrow",
      "title": "A 'ggplot2' geom to draw subgene segments of gene arrows",
      "topics": [
        "geom_subgene_arrow"
      ]
    },
    {
      "page": "geom_subgene_label",
      "title": "A 'ggplot2' geom to add text labels to subgenes",
      "topics": [
        "geom_subgene_label"
      ]
    },
    {
      "page": "geom_terminator",
      "title": "A 'ggplot2' geom to draw transcription terminators",
      "topics": [
        "geom_terminator"
      ]
    },
    {
      "page": "geom_terminator_label",
      "title": "A 'ggplot2' geom to add text labels to transcription terminators",
      "topics": [
        "geom_terminator_label"
      ]
    },
    {
      "page": "make_alignment_dummies",
      "title": "Prepare dummy data to visually align a single gene across faceted molecules",
      "topics": [
        "make_alignment_dummies"
      ]
    },
    {
      "page": "theme_genes",
      "title": "A 'ggplot2' theme for drawing gene maps",
      "topics": [
        "theme_genes",
        "theme_genes_flipped"
      ]
    }
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        "The Problem",
        "The Solution: Deferred Rendering",
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        "The compose_grob() Pipeline",
        "Geometry Functions",
        "Unit Conversion",
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      "created": "2026-01-12 13:41:39",
      "modified": "2026-01-13 00:55:20",
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    {
      "source": "introduction-to-gggenes.Rmd",
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      "title": "Introduction to 'gggenes'",
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        "Beautifying the plot with theme_genes()",
        "Aligning genes across facets with make_alignment_dummies()",
        "Labelling genes with geom_gene_label()",
        "Reversing gene direction with the optional forward aesthetic",
        "Viewing subgene segments",
        "Drawing point genetic features"
      ],
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